The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0563
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 320654
End posion on genome 320783
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tagctcccgg
tRNA gene sequence 
GCCGGGGTAGCTCAGCCAGGTGGAGCACTCGGCTGTTAACCGAGGGGTCCCGGGTTCAAA
TCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
ctcctcccga
Secondary structure (Cloverleaf model)
>At0563	Asn	GTT
                   g      GCCA ctcctcccga
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T G        A     GGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCTCAGCCAGGTGGattcccgccttagggagagccgagAGCACTCGGCTGT
TAACCGAGccgcgtgctaccagtagcacgcgcgggaaGGGTCCCGGGTTCAAATCCCGGC
CCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK