The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0564
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 321677
End posion on genome 321786
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gtacctgcag
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGACAAAGGGGGCGGACTTAAGATCCGCTGGCGTTGGCCTGC
CCGGGTTCGAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position 
ccttctccca
Secondary structure (Cloverleaf model)
>At0564	Leu	TAA
                   g      ACCA ccttctccca
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     G
  A         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    A C A A        G     TGGCGTTGGCCTGC
                    G - C
                    C - G
                    G - C
                   *G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGACAAAGGGGGCGGactgcctggacgtatggcccaaACTTA
AGATCCGCTGGCGTTGGCCTGCCCGGGTTCGAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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