The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0565
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 360726
End posion on genome 360820
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tagaggctca
tRNA gene sequence 
GCGGCCGTAGTCTAGCCTGGTAGGATGGCGGCCTCCCAAGCCGCAGAACCCGGGTTCAAA
TCCCGGCGGCCGCACCA
Downstream region at tRNA end position 
cttcccatct
Secondary structure (Cloverleaf model)
>At0565	Gly	CCC
                   a      ACCA cttcccatct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     AGAAC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGCCTGGTAGGATGGCGGCCTCCCAAGCCGCAGagccttaaaggcgc
ggaaAACCCGGGTTCAAATCCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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