The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0566
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 394340
End posion on genome 394440
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tgagacgacg
tRNA gene sequence 
GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCCTTCGGAGCCGTAGGTCCCGGGTTCAAG
TCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
aagggttcgc
Secondary structure (Cloverleaf model)
>At0566	Arg	TCG
                   g      GCCA aagggttcgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
      T G A        A      | | | | |     A
    C       C G C G       C C G G G     C
    A       | | | |                 T T
    G       G C G C
      G A A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCCTTCGGAGCCGTAGtgtgccttgaagag
gcacgcggacGTCCCGGGTTCAAGTCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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