The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0567
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 394845
End posion on genome 394954
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tctttcacgc
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGGCGGATTGCTAATCCGTTACCCGTTGAGGGTGC
CCGGGTTCGAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
tgcctcttag
Secondary structure (Cloverleaf model)
>At0567	Ser	GCT
                   c      GCCA tgcctcttag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       C C G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TACCCGTTGAGGGTGC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T*      A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGCCCAAGGCGGCGGATTcgcgcgaaagcgcggacgcagtGCTA
ATCCGTTACCCGTTGAGGGTGCCCGGGTTCGAATCCCGGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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