The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0569
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 424782
End posion on genome 424890
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gagcgctata
tRNA gene sequence 
GCCGGGGTAGCTCAGCTGGGAGAGCGCTCGGCTGAAGACCGAGTAGAGGTCCCGGGTTCA
AATCCCGGCCCCGGCACCA
Downstream region at tRNA end position 
ctcttcccca
Secondary structure (Cloverleaf model)
>At0569	Phe	GAA
                   a      ACCA ctcttcccca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     TAGAGGTC
                    C - G
                    T - A
                    C - G *
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCTCAGCTGGGAGAGCGCTCGGCTGAAGACCGAGTcgcgcacccggcatag
aggtgcgctgcgggAGAGGTCCCGGGTTCAAATCCCGGCCCCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK