The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0572
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 465061
End posion on genome 465148
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
agacgcgcgg
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGCGGACTGAGGCTCCGCTGGCGTTGGCCTGC
CCGGGTTCGAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position 
ttctccccag
Secondary structure (Cloverleaf model)
>At0572	Leu	GAG
                   g      ACCA ttctccccag
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    T C G A        G      | | | | |     G
  A         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTTGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       C
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGCGGACTGAGGCTCCGCTGGCGTTGGCCTGC
CCGGGTTCGAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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