The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0578
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 612342
End posion on genome 612484
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gcttgctttg
tRNA gene sequence 
GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGCTTGGGCCCAGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
tctccagata
Secondary structure (Cloverleaf model)
>At0578	Pro	TGG
                   g      ACCA tctccagata
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C C T G       C C G G G     C
    T       | | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C*      C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGCacgaggcaaaaactcgcaggacTTGGG
atctcgaagacaagagCCCAGGTGGagcccgggaaaaccccccgggcgccgaaTCCCGGG
TTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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