The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0579
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 643667
End posion on genome 643802
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gcatacgtcc
tRNA gene sequence 
GGGGCCGTAGTCTAGCTTGGTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
cgttacataa
Secondary structure (Cloverleaf model)
>At0579	Pro	GGG
                   c      ACCA cgttacataa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCTTGGTAGGATaggcttccctaaaGCCAGCCTGGGGgtgtacccc
gtgaccggacCGCTGGagcgcgcggttcgccgcgcgtagcgagTGGTCCCGGGTTCAAAT
CCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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