The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0581
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 743058
End posion on genome 743158
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atggtcttta
tRNA gene sequence 
GCCCCGGTAGCTCAGCGGGTGGAGCGTCGGCCTCGTAAGCCGAAGGTCCCGGGTTCAAAT
CCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
acgcgcggcg
Secondary structure (Cloverleaf model)
>At0581	Thr	CGT
                   a      TCCA acgcgcggcg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      T G          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCGGGTGGAGCGTCGGCCTCGTAagggaggctgcgcggggttcgag
aaAGCCGAAGGTCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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