The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0584
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 841812
End posion on genome 841904
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
atagagggta
tRNA gene sequence 
GCCCCGGTAGCTCAGTTGGAAGAGCGCCGCTCTGGTAAGGCGGAGGTCCCGGGTTCAATC
CCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
tgcgtcatgt
Secondary structure (Cloverleaf model)
>At0584	Thr	GGT
                   a      TCCA tgcgtcatgt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          C T
                    T     G G C C C     A
      T G A        A      | | | | |     A
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A
                  T       A *
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGTTGGAAGAGCGCCGCTCTGGTAactagccctggctggaaAGGCGG
AGGTCCCGGGTTCAATCCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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