The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0586
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 231236
End posion on genome 231134
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
gtttacgtga
tRNA gene sequence 
GCCGGGGTGGCCGAGTGGACTAAGGCGGTGGACTTGAGATCCACTACCCGTTAAGGGTGC
CCGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
ctcccagttc
Secondary structure (Cloverleaf model)
>At0586	Ser	TGA
                   a      GCCA ctcccagttc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      T G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    A       A G G C
      C T A        G     TACCCGTTAAGGGTGC
                    G - C
                    T - A
                    G - C
                    G - C
                    A - T
                  C*      A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGTGGACTAAGGCGGTGGACactcataagccacagTTGAGATCCACT
ACCCGTTAAGGGTGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK