The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0587
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 257417
End posion on genome 257293
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
gaaaagggtt
tRNA gene sequence 
GGGCCCGTCGTCTAGCGGTTAGGATGTCGCCCTCACACGGCGGAGGTCCCGGGTTCGAAT
CCCGGCGGGCCCACCA
Downstream region at tRNA end position 
tttttcctgt
Secondary structure (Cloverleaf model)
>At0587	Val	CAC
                   t      ACCA tttttcctgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCGGTTAGGATacggggtgggcgcctaagGTCGCCCTCACAagggt
cgaggagggggtttcgatcctgagagCGGCGGAGGTCCCGGGTTCGAATCCCGGCGGGCC
CACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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