The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0588
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 257601
End posion on genome 257498
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position
cggcgggcat
tRNA gene sequence
GGGCCGGTAGCTCAGCTAGGTAGAGCGACGGGCTTTTAACCCGTAGGTCCCGGGTTCGAA
TCCCGGCCGGCCCGCCA
Downstream region at tRNA end position
ataattccat
Secondary structure (Cloverleaf model)
>At0588	Lys	TTT
                   t      GCCA ataattccat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCTAGGTAGAGCGACGGtgtgggacaagctagccctgcgtcgagGC
TTTTAACCCGTAGGTCCCGGGTTCGAATCCCGGCCGGCCCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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