The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0589
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 257851
End posion on genome 257751
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atagccttta
tRNA gene sequence 
GCCCCGGTAGCTCAGCGGGTGGAGCGTCGGCCTTGTAAGCCGAAGGTCCCGGGTTCGAAT
CCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
tgccgttttc
Secondary structure (Cloverleaf model)
>At0589	Thr	TGT
                   a      TCCA tgccgttttc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      T G          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCGGGTGGAGCGTCGGCCTTGTAagggaggctgcgcggggttcgag
aaAGCCGAAGGTCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK