The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0592
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 392187
End posion on genome 392065
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttctgcagg
tRNA gene sequence 
GGGCCGGTCGTCTAGTGGGAGGATACCGCCCTTGCACGGCGGAGGTCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
ccttttcctg
Secondary structure (Cloverleaf model)
>At0592	Ala	TGC
                   g      ACCA ccttttcctg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        C      | | | | |     G
      T     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        G A        A     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTCGTCTAGTGGGAGGATaaccccttttactcaaACCGCCCTTGCAagggtcgc
gtaaaggggcttcgatcccgagagCGGCGGAGGTCCCGGGTTCGAATCCCGGCCGGTCCA
CCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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