The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0594
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 438741
End posion on genome 438644
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
gcgacacatg
tRNA gene sequence 
GGGCCGGTAGCTCAGCTAGGTAGAGCGGCGGGCTCTTAACCCGTAGGTCCCGGGTTCGAA
TCCCGGCCGGCCCGCCA
Downstream region at tRNA end position 
tacgtccagc
Secondary structure (Cloverleaf model)
>At0594	Lys	CTT
                   g      GCCA tacgtccagc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCTAGGTAGAGCGGCGGtctaagcaactctgggtcgagGCTCTTAA
CCCGTAGGTCCCGGGTTCGAATCCCGGCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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