The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0597
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 530904
End posion on genome 530806
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ctccgtcatg
tRNA gene sequence 
GGGCCCGTGGCGTAGCCAGGAAGCGTGGCGGCCTCCGGAGCCGCAGGAAGCCCCGGGTTC
AAATCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
cttgctcacg
Secondary structure (Cloverleaf model)
>At0597	Arg	CCG
                   g      GCCA cttgctcacg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       T G C G       C C G G G     C
    A       + | | +                 T T
    G       G C G T
      G A A        G     AGGAAGCC
                    G - C
                    C - G *
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCGTAGCCAGGAAGCGTGGCGGCCTCCGGAGCCGCAGagcccgtgcgggcg
tagcgGAAGCCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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