The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0598
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 531645
End posion on genome 531503
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tgcttgcttt
tRNA gene sequence 
GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGCTCGGGCCCAGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
ctttccgggg
Secondary structure (Cloverleaf model)
>At0598	Pro	CGG
                   t      ACCA ctttccgggg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C C T G       C C G G G     C
    T       | | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C*      C
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCCAGCCTGGTAGGATGCCTGGCacgaggcaaaaactcgcaggatTCGGG
atctcgaagacaagagCCCAGGTGGagcccgggataaacccccgggcgccgaaTCCCGGG
TTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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