The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0599
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 538865
End posion on genome 538745
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
taggtgcgta
tRNA gene sequence 
GCCCCGGTCGTCTAGCCCGGTCAAGGATATCGGCCTTTCGAGCCGAGGATCCCGGGTTCA
AATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
tcccctgttc
Secondary structure (Cloverleaf model)
>At0599	Glu	TTC
                   a      ACCA tcccctgttc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        A     GGATC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTCGTCTAGCCCGGTCAacctgcagggggttgagAGGATATCGGCCTTTCGAGC
CGAGGagcccgtgcgacggcgggcgcggatATCCCGGGTTCAAATCCCGGCCGGGGCACC
A
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK