The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0601
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 563512
End posion on genome 563409
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ttttgaatca
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTTAAAGGGGGCGGACTCAAGATCCGCTGGCGTTGGCCTGC
CCGGGTTCGAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position 
ttctccccgg
Secondary structure (Cloverleaf model)
>At0601	Leu	CAA
                   a      ACCA ttctccccgg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     G
  A         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    T T A A        G     TGGCGTTGGCCTGC
                    G - C
                    C - G
                    G - C
                   *G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTTAAAGGGGGCGGacccctaggggcctagACTCAAGATCC
GCTGGCGTTGGCCTGCCCGGGTTCGAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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