The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0602
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 652168
End posion on genome 652073
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gctgggtaaa
tRNA gene sequence 
GGGCCCGTGGCGTAGCTAGGAAGCGTGGCGGCCTGCGGAGCCGTTGGTCCCGGGTTCAAG
TCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
gccgcgtggt
Secondary structure (Cloverleaf model)
>At0602	Arg	GCG
                   a      GCCA gccgcgtggt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
      C G A        G      | | | | |     A
    T       T G C G       C C G G G     C
    A       + | | +                 T T
    G       G C G T
      G A A        G     TGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCGTAGCTAGGAAGCGTGGCGGCCTGCGGAGCCGTTGagcgctggtgcgcg
cggacGTCCCGGGTTCAAGTCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK