The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0603
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 709883
End posion on genome 709759
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tcgcctccta
tRNA gene sequence 
GCCCCGGTCGTCTAGCCCGGTCAAGGATATCGGCCTCTCGAGCCGAAGATCCCGGGTTCA
AATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
gctcccactt
Secondary structure (Cloverleaf model)
>At0603	Glu	CTC
                   a      ACCA gctcccactt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        A     AGATC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTCGTCTAGCCCGGTCAacctgcacgaggctgagAGGATATCGGCCTCTCGAGC
CGAAGagcggcgcagacaggcgcaacgcgcggacATCCCGGGTTCAAATCCCGGCCGGGG
CACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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