The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0604
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 770046
End posion on genome 769939
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
ttttctggca
tRNA gene sequence 
GGGCCGGTCGTCTAGTGGGAGGATGTCCGCTTGGCATGCGGGTGGTCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
gcttctccct
Secondary structure (Cloverleaf model)
>At0604	Ala	GGC
                   a      ACCA gcttctccct
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        C      | | | | |     G
      T     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        G A        G     TGGTC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTCGTCTAGTGGGAGGATGTCCGCTTGGCATGCGGGacacgcgcctctctcggg
aggcgcgggcgcgaaTGGTCCCGGGTTCGAATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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