The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0605
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 81733
End posion on genome 81805
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
ttcgaatcga
tRNA gene sequence 
AGCCCCGTGGGGTAGCGGTCAATCCTGCCGGACTCTGGATCCGGCGACGCCGGTTCGAAT
CCGGCCGGGGCTAtct
Downstream region at tRNA end position 
gttttgtttt
Secondary structure (Cloverleaf model)
>At0605	Gln	CTG
                   a      Atct gttttgtttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G G C C     A
      C G A        G      | | | | |     G
    G       T G G G       G C C G G     C
    G         | | +                 T T
    T       T C C T
      C A A        G     CGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCCGTGGGGTAGCGGTCAATCCTGCCGGACTCTGGATCCGGCGACGCCGGTTCGAAT
CCGGCCGGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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