The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0607
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 367982
End posion on genome 368055
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position
cttggaaaga
tRNA gene sequence
GGACCCGTAGCCTAGCAGGACAGGGCGTGGGCCTCCTAAGCCCAAGGTCGCGGGTTCGAA
TCCCGCCGGGTCCGctt
Downstream region at tRNA end position
ctgttctcaa
Secondary structure (Cloverleaf model)
>At0607	Arg	CCT
                   a      Gctt ctgttctcaa
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     G
    A       T C C G       G C G G G     C
    G       + | | |                 T T
    G       G G G C
      A C A        G     AGGTC
                    T - A
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCCTAGCAGGACAGGGCGTGGGCCTCCTAAGCCCAAGGTCGCGGGTTCGAA
TCCCGCCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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