The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0608
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 398197
End posion on genome 398279
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position
tttcatctga
tRNA gene sequence
GCGGGGGTTGCCGAGCGGACAAAGGCGCAGGATTGAGGGTCCTGTCCCGTAGGGGTTCGA
GGGTTCGAATCCCTCCCCCCGCAttt
Downstream region at tRNA end position
agttctgttc
Secondary structure (Cloverleaf model)
>At0608	Leu	GAG
                   a      Attt agttctgttc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        T      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    A       A G G C
      C A A        G     TCCCGTAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCGGACAAAGGCGCAGGATTGAGGGTCCTGTCCCGTAGGGGTTCGA
GGGTTCGAATCCCTCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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