The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0611
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 616419
End posion on genome 616490
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
tttccacgtc
tRNA gene sequence 
GCCCCCGTGGGGTAGCGGATATCCTGAGGGGCTGCGGACTCCTCGACCCGGGTTCAACTC
CCGGCGGGGGCAtgg
Downstream region at tRNA end position 
aatttttaat
Secondary structure (Cloverleaf model)
>At0611	Arg	GCG
                   c      Atgg aatttttaat
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T C
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      T A          G     CGAC
                    A - T
                    G - C
                    G - C
                    G + T
                    G - C
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCCGTGGGGTAGCGGATATCCTGAGGGGCTGCGGACTCCTCGACCCGGGTTCAACTC
CCGGCGGGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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