The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0612
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 714318
End posion on genome 714389
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cctccgaatg
tRNA gene sequence 
GCCCGGATGGGGTAGTGGTTATCCTCTGGGACTGTGGATCCCAGGAGCCGGGTTCGAATC
CCGGTCCGGGCCctt
Downstream region at tRNA end position 
taaaaccagt
Secondary structure (Cloverleaf model)
>At0612	His	GTG
                   g      Cctt taaaaccagt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    T       T C C T
      T A          C     GGAG
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGATGGGGTAGTGGTTATCCTCTGGGACTGTGGATCCCAGGAGCCGGGTTCGAATC
CCGGTCCGGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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