The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0613
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 778083
End posion on genome 778153
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position
gcaatgacaa
tRNA gene sequence
GCGCGGGTAGTCTAGCGGTAGGACAACGCCCTTCCGAGGCGTTAGCCCGGGTTCGAATCC
CGGCCCGCGCAcat
Downstream region at tRNA end position
tggtttttaa
Secondary structure (Cloverleaf model)
>At0613	Gly	TCC
                   a      Acat tggtttttaa
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        T A        A     TAGC
                    A - T
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCGGGTAGTCTAGCGGTAGGACAACGCCCTTCCGAGGCGTTAGCCCGGGTTCGAATCC
CGGCCCGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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