The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0618
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1320292
End posion on genome 1320364
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
agcatttcag
tRNA gene sequence 
GCCACGGTAGCTCAGCAGGAAGAGCGCGTGCTTGGTAAGCACGAGGTCCCGGGTTCAAAT
CCCGGCCGTGGCTtgc
Downstream region at tRNA end position 
tttattttca
Secondary structure (Cloverleaf model)
>At0618	Thr	GGT
                   g      Ttgc tttattttca
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    A       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGTC
                    C - G
                    G - C
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACGGTAGCTCAGCAGGAAGAGCGCGTGCTTGGTAAGCACGAGGTCCCGGGTTCAAAT
CCCGGCCGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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