The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0620
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1842387
End posion on genome 1842457
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position
aagcgtacaa
tRNA gene sequence
GCGGTCGTAGTCTAGCGGCAGGACACGGGCCTCCCGAGCCCGTTGCCCGGGTTCGAATCC
CGGCGGCCGCActg
Downstream region at tRNA end position
ttttttgttt
Secondary structure (Cloverleaf model)
>At0620	Gly	CCC
                   a      Actg ttttttgttt
                     G - C
                     C - G
                     G - C
                     G - C
                     T + G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        C A        A     TTGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTCGTAGTCTAGCGGCAGGACACGGGCCTCCCGAGCCCGTTGCCCGGGTTCGAATCC
CGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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