The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0621
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1884704
End posion on genome 1884777
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position
actcatccaa
tRNA gene sequence
GGGCCGGTAGCTCAGTCTGGTAGAGCGTCGCCTTGGCATGGCGAAGGCCTGGGGTTCAAA
TCCCCACCGGTCCAtgc
Downstream region at tRNA end position
catattctgc
Secondary structure (Cloverleaf model)
>At0621	Ala	GGC
                   a      Atgc catattctgc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A C C C C     A
      T G A        A      | | | | |     A
    C       C T C G       T G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGTCTGGTAGAGCGTCGCCTTGGCATGGCGAAGGCCTGGGGTTCAAA
TCCCCACCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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