The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0622
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 2011702
End posion on genome 2011775
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
caatcatgca
tRNA gene sequence 
GGGCCGGTAGCTTAGCCAGGCAGAGCGCGGGACTCTTAATCCCGCAGTCGGGGGTTCAAA
TCCCTCCCGGCCCGctg
Downstream region at tRNA end position 
tttgtgagca
Secondary structure (Cloverleaf model)
>At0622	Lys	CTT
                   a      Gctg tttgtgagca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | + | | |     A
    C       T T C G       G G G G G     C
    A       + | | |                 T T
    G       G A G C
      G C A        G     CAGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTTAGCCAGGCAGAGCGCGGGACTCTTAATCCCGCAGTCGGGGGTTCAAA
TCCCTCCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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