The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0623
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 2088004
End posion on genome 2088076
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
agacaaacag
tRNA gene sequence 
GGGCTCGTGGTCTAGGGGTCATGACGTCGCCTTGACGAGGCGAAGGTCGCCCGTTCGAAT
CGGGCCGAGCCCActa
Downstream region at tRNA end position 
aattcttaaa
Secondary structure (Cloverleaf model)
>At0623	Val	GAC
                   g      Acta aattcttaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C G G G C     A
      G G A        G      | | | | |     G
    G       T C T G       G C C C G     C
    G         | | |                 T T
    T       T G A C
      C A          G     AGGTC
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGGGGTCATGACGTCGCCTTGACGAGGCGAAGGTCGCCCGTTCGAAT
CGGGCCGAGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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