The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0624
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 73342
End posion on genome 73268
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position
agctgactga
tRNA gene sequence
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCTCGCCTGATAAGCGAGAGGTCCGGGGTTCGA
ACCCCCGCGGGCCCAttt
Downstream region at tRNA end position
ttaaggtggg
Secondary structure (Cloverleaf model)
>At0624	Ile	GAT
                   a      Attt ttaaggtggg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          C A
                    T     G C C C C     A
    C C G A        G      | | | | |     G
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCTCGCCTGATAAGCGAGAGGTCCGGGGTTCGA
ACCCCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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