The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0627
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 235571
End posion on genome 235499
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
caacccttaa
tRNA gene sequence 
GGGCTCGTGGTCTAGTGGTTATGACGCCTGCCTCACACGCAGGAGGTCCCCGGTTCGAAT
CCGGGCGAGCCCAttt
Downstream region at tRNA end position 
atttctttag
Secondary structure (Cloverleaf model)
>At0627	Val	CAC
                   a      Attt atttctttag
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     G G G C C     A
      T G A        G      | | | | |     G
    G       T C T G       C C C G G     C
    G         | | |                 T T
    T       T G A C
      T A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGTGGTTATGACGCCTGCCTCACACGCAGGAGGTCCCCGGTTCGAAT
CCGGGCGAGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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