The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0628
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 235858
End posion on genome 235749
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
agagccacaa
tRNA gene sequence 
GCCCGGGTGGTGTAGTCCGGCCTATCATGCGGGCCTGTCGAGCCCGCGACTCGGGTTCAA
ATCCCGGCCCGGGCGctc
Downstream region at tRNA end position 
tcatcgctta
Secondary structure (Cloverleaf model)
>At0628	Asp	GTC
                   a      Gctc tcatcgctta
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C T A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTGGTGTAGTCCGGCCTATCATGCGGGCCTGTCGtggagatggggtccttaagc
cctaaatccgcggaaAGCCCGCGACTCGGGTTCAAATCCCGGCCCGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK