The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0629
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 319266
End posion on genome 319184
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
cgcaatttaa
tRNA gene sequence
GCGGGGGTTGCCGAGCGGCCAAAGGCGCTGGATTTAGGGTCCAGTCCCGTAGGGGTTCGA
GGGTTCGAATCCCTCCCCCCGCAtga
Downstream region at tRNA end position
tttagctctc
Secondary structure (Cloverleaf model)
>At0629	Leu	TAG
                   a      Atga tttagctctc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        T      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    C       A G G C
      C A A        G     TCCCGTAGGGGTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCGGCCAAAGGCGCTGGATTTAGGGTCCAGTCCCGTAGGGGTTCGA
GGGTTCGAATCCCTCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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