The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0632
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 766944
End posion on genome 766847
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
gcttgcctga
tRNA gene sequence 
GCGGGGGTTGCCGAGTGGCCAAAGGCGGTGGACTCAAGATCCACTCCCGTAGGGGTTCGA
GGGTTCGAATCCCTCCCCCCGCAtca
Downstream region at tRNA end position 
ctgaaccttc
Secondary structure (Cloverleaf model)
>At0632	Leu	CAA
                   a      Atca ctgaaccttc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        T      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    C       A G G C
      C A A        G     TCCCGTAGGGGTTC
                    G - C
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGTGGCCAAAGGCGGTGGACTCAAGacctgatggggagaaATCCACT
CCCGTAGGGGTTCGAGGGTTCGAATCCCTCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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