The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0634
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 985809
End posion on genome 985738
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ccttttttct
tRNA gene sequence 
GCCCCCGTGGGGTAGGGGACATCCTGGTGGCCTTCGGAGCCACAGACCCGGGTTCGATTC
CCGGCGGGGGCGtca
Downstream region at tRNA end position 
gaaagtattt
Secondary structure (Cloverleaf model)
>At0634	Arg	TCG
                   t      Gtca gaaagtattt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T T
                    T     G G C C C     A
      G G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      C A          G     AGAC
                    G - C
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCCGTGGGGTAGGGGACATCCTGGTGGCCTTCGGAGCCACAGACCCGGGTTCGATTC
CCGGCGGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK