The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0635
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1003139
End posion on genome 1003055
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ctaaggctaa
tRNA gene sequence 
GCCGGGGTTGCAGAGCCAGGCCACTGCGGGAGACTCGAGATCTCCTGCCCGAAAGGGCGC
GTGGGTTCGAATCCCACCCCCGGCGctt
Downstream region at tRNA end position 
accagatgag
Secondary structure (Cloverleaf model)
>At0635	Ser	CGA
                   a      Gctt accagatgag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        T      | | | | |     G
  A         G A C G       G T G G G     C
  G         | | | |                 T T
  G         C T G C
    C C A          G     TGCCCGAAAGGGCGC
                    G - C
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTTGCAGAGCCAGGCCACTGCGGGAGACTCGAGATCTCCTGCCCGAAAGGGCGC
GTGGGTTCGAATCCCACCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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