The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0638
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1317544
End posion on genome 1317473
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tccttatcaa
tRNA gene sequence 
GCCAGGGTGGCAGAGGGGCTATGCGGCGGACTGCAGATCCGCTTTACCCCGGTTCGAATC
CGGGCCCTGGCTctc
Downstream region at tRNA end position 
tttatttggt
Secondary structure (Cloverleaf model)
>At0638	Cys	GCA
                   a      Tctc tttatttggt
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     G G G C C     A
        G A        G      | | | | |     G
      G     G A C G       C C C G G     C
      G       | | |                 T T
      G     A T G C
        C T        G     TTTAC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGGTGGCAGAGGGGCTATGCGGCGGACTGCAGATCCGCTTTACCCCGGTTCGAATC
CGGGCCCTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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