The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0640
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1369466
End posion on genome 1369385
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
gaggcgttag
tRNA gene sequence
GCCGGGGTTGCCGAGCGGTAAGGCGCACGCCTGGAGAGCGTGTGGGCGTTCGCCCGCGTG
GGTTCGAATCCCACCCCCGGCGctg
Downstream region at tRNA end position
ttgtatcttg
Secondary structure (Cloverleaf model)
>At0640	Ser	GGA
                   g      Gctg ttgtatcttg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
        G A        T      | | | | |     G
      C     G C C G       G T G G G     C
      G       | | |                 T T
      G     A G G C
        T A        G     TGGGCGTTCGCCCGC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTTGCCGAGCGGTAAGGCGCACGCCTGGAGAGCGTGTGGGCGTTCGCCCGCGTG
GGTTCGAATCCCACCCCCGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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