The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0642
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1694428
End posion on genome 1694356
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
accccatgct
tRNA gene sequence 
GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGACTTGTAATCACCAGGTCGCGGGTTCAAAT
CCCGCCGGCGGCTttc
Downstream region at tRNA end position 
ctgataattt
Secondary structure (Cloverleaf model)
>At0642	Thr	TGT
                   t      Tttc ctgataattt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    G - C
                    G - C
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGACTTGTAATCACCAGGTCGCGGGTTCAAAT
CCCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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