The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0645
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1810428
End posion on genome 1810355
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tcattacaga
tRNA gene sequence 
GGGGCCGTAGGGTAGCCTGGTGATCCTCTCGGCTTTGGGAGCCGGTGACCCGAGTTCAAA
TCTCGGCGGCCCCAtca
Downstream region at tRNA end position 
ttgaactggc
Secondary structure (Cloverleaf model)
>At0645	Pro	TGG
                   a      Atca ttgaactggc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    C C G A        A      | | | | |     A
  T         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T G A          C     TGAC
                    T + G
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCCTGGTGATCCTCTCGGCTTTGGGAGCCGGTGACCCGAGTTCAAA
TCTCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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