The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0646
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1960974
End posion on genome 1960891
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atttttccaa
tRNA gene sequence 
GCGGGGGTTGCCGAGCCAGGAAAAGGCGCAGGGCTTAAGACCCTGTCCCGAAGGGGTCCG
CGGGTTCGAATCCCGCCCCCCGCAtgc
Downstream region at tRNA end position 
tttttactgc
Secondary structure (Cloverleaf model)
>At0646	Leu	TAA
                   a      Atgc tttttactgc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        T      | | | | |     G
  A         G C C G       G C G G G     C
  G           | | |                 T T
  G         A G G C
    A A A          G     TCCCGAAGGGGTCC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCAGGAAAAGGCGCAGGGCTTAAGACCCTGTCCCGAAGGGGTCCG
CGGGTTCGAATCCCGCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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