The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0647
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1977911
End posion on genome 1977838
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
aataggttaa
tRNA gene sequence 
GCCCGGGTAGCTCAGCCAGGGAGAGCGTGCGGCTGAAGACCGCATAGTCCCCGGTTCAAA
TCCGGGTCCGGGCAttt
Downstream region at tRNA end position 
ctatccttaa
Secondary structure (Cloverleaf model)
>At0647	Phe	GAA
                   a      Attt ctatccttaa
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G + T          T A
                    T     G G G C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C C G G     C
    A       | | | |                 T T
    G       G A G C
      G G A        G     TAGTC
                    T - A
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTAGCTCAGCCAGGGAGAGCGTGCGGCTGAAGACCGCATAGTCCCCGGTTCAAA
TCCGGGTCCGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK