The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0655
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 730470
End posion on genome 730544
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tacaggaagc
tRNA gene sequence 
GGGGTAGTAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACGGCGGTTCGA
ATCCGCCCTACCCCAtgc
Downstream region at tRNA end position 
atggacgcac
Secondary structure (Cloverleaf model)
>At0655	Pro	TGG
                   c      Atgc atggacgcac
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T
                     G - C          T A
                    T     C C G C C     A
    C C G A        A      | | | | |     G
  T         T G G G       G G C G G     C
  G           | | +                 T T
  G         T C C T
    T C C A        A     TGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTAGTAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACGGCGGTTCGA
ATCCGCCCTACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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