The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0657
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1259143
End posion on genome 1259214
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position
agagcacact
tRNA gene sequence
GCGCCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACTCGGGTTCGAGTC
CCGATCGGCGCActt
Downstream region at tRNA end position
cttgttttgt
Secondary structure (Cloverleaf model)
>At0657	Gly	GCC
                   t      Actt cttgttttgt
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T          T G
                    T     A G C C C     A
      T G A        A      | | | | |     G
    G       T G T G       T C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          T     AAAC
                    A - T
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACTCGGGTTCGAGTC
CCGATCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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